2024
- Davidson, PL, Moczek, AP. Genome evolution and divergence in cis-regulatory architecture is associated with condition-responsive development in horned dung beetles. PLoS Genetics. 20(3):e1011165. Link
2023
- Davidson, PL*, Nadolski, EM*, Moczek, AP. Gene regulatory networks underlying the development and evolution of plasticity in horned beetles. Current Opinion in Insect Science. 60:101114. Link
- Devens, HR, Davidson, PL, Byrne, M, Wray, GA. Hybrid epigenomes reveal extensive local
genetic changes to chromatin accessibility that contribute to divergence in embryonic gene expression between species. Molecular Biology & Evolution. 40:msad222. Link
- Davidson, PL, Lessios, HA, Wray, GA, McMillan, WO, Prada, C. Near chromosomal-level genome assembly of the sea
urchin Echinometra lucunter, a model for speciation in
the sea. Genome Biology & Evolution. 15:evad093. Link
2022
- Davidson, PL, Guo, H, Swart, JS, Massri, AJ, Edgar, A, Wang, L, Berrio, A, Devens,
HR, Zhang, H, Chang, Y, Byrne, M, Fan, G, Wray, GA. Recent reconfiguration of
an ancient developmental gene regulatory network in Heliocidaris sea urchins.
Nature Ecology & Evolution. 6:1907–1920. Link
- Davidson, PL, Byrne, M, Wray, GA. Evolutionary changes in the chromatin
landscape contribute to reorganization of a developmental gene regulatory
network during rapid life history divergence in sea urchins. Molecular Biology &
Evolution. 39:msac172. Link
- Ketchum, RN, Davidson, PL, Smith EG, Wray, GA, Burt, JA, Ryan, JF, Reitzel, AM.
Chromosome-level genome assembly of the highly heterozygous sea urchin
Echinometra sp. EZ reveals adaptation in the regulatory regions of stress response genes.
Genome Biology & Evolution.14:evac144. Link
2021
- Song, H*, Guo*, X*, Sun, L*, Wang, Q*, Han, F. Wang, H, Wray, GA, Davidson, PL,
Wang, Q, Hu, Z, Zhou, C, Yu, Z, Yang, M, Feng, J, Shi, P, Zhou, Y, Zhang, L,
Zhang, T. Hard clam genome reveals massive expansion and diversification of
inhibitors of apoptosis underlying stress adaptation. BMC Biology. 19,15. Link
- Byrne, M, Koop, D, Strbenac, D, Cisternas, P, Yang, JWH, Davidson, PL, Wray,
GA. Transcriptomic analysis of Nodal- and BMP-associated genes during
development to the juvenile sea star in Parvulastra exigua (Asterinidae). Marine
Genomics. 59:100857. Link
2020
- Davidson, PL*, Guo, H*, Wang, L, Berrio, A, Zhang, H, Chang, Y, Soborowski, AL,
McClay, DR, Fan, G, Wray, GA. Chromosomal-Level genome assembly of the
sea urchin Lytechinus variegatus substantially improves functional genomic
analyses. Genome Biology & Evolution. 12:1080–1086. Link
- Devens, HR*, Davidson, PL*, Deaker, DJ, Smith, KE, Wray, GA, Byrne, M. Ocean
acidification induces distinct transcriptomic responses across life history stages of
the sea urchin Heliocidaris erythrogramma. Molecular Ecology. 29:4618-4636. Link
- Byrne, M, Koop, D, Strbenac, D, Cisternas, Paula, Balogh, R, Yang, JYH, Davidson,
PL, Wray, GA. Transcriptomic analysis of sea star development through
metamorphosis to the highly derived pentameral body plan with a focus on neural
transcription factors. DNA Research. 27: dsaa007. Link
2019
- Davidson, PL, Thompson, JW, Foster, MW, Moseley, MA, Byrne, M, Wray, GA. A
comparative analysis of egg provisioning using mass spectrometry during rapid
life history evolution in sea urchins. Evolution & Development. 21:188-204. Link
2017
- Davidson, PL, Koch, BJ, Schnitzler, CE, Henry, JQ, Martindale, MQ, Baxevanis, AD,
Browne, WE. The maternal-zygotic transition and zygotic activation of
Mnemiopsis leidyi genome occurs within the first three cell cycles. Molecular
Reproduction & Development. 84:1218-1229. (Cover feature) Link